PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g16450.3
Common NameLR48_Vigan07g281600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 237aa    MW: 26034.1 Da    PI: 4.1106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g16450.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.7e-171362255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +kGVr++  +g+WvAeIr+p   + r +r +lg++ t  eAa a++ a+++l+g
  Vang01g16450.3 13 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYETSVEAAMAYDCAARQLYG 62
                    69****999.**********8...3.35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.65E-291272No hitNo description
SMARTSM003801.5E-311376IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-201371IPR016177DNA-binding domain
PROSITE profilePS5103221.2191370IPR001471AP2/ERF domain
PfamPF008472.8E-121462IPR001471AP2/ERF domain
PRINTSPR003671.1E-81425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-291471IPR001471AP2/ERF domain
PRINTSPR003671.1E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRGKGGPENA SCTFKGVRQR TWGKWVAEIR EPNRGARLWL GTYETSVEAA MAYDCAARQL  60
YGSDAKLNLP DLAMALAFNF QFPPPSPQIP HMQPSPQLQH SQIPSPYDIF NLPSFDFINN  120
LTDDTNIMFN PVLSMPPQHA IADSAPVYAS DSHVAVPYEN TTIPMAIHPS NPLEINEDTV  180
DPFGGSFNDI PDPMFDDSIW AEAARSLDFP LIPDAAGINE AETFLEVGPW DSLQTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-171470663ATERF1
3gcc_A2e-171470663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503444.11e-155PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0L9V2L61e-176A0A0L9V2L6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQG11e-176A0A0S3RQG1_PHAAN; Uncharacterized protein
STRINGGLYMA06G03110.18e-55(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.18e-40ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]